Detailed information of SNP:
|
SNP ID:
sf1106623809(Gbrowse)
Chromosome: chr11 Position: 6623809 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 91.39% | 8.61% |
| All Indica | 797 | 90.34% | 9.66% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 40.30% | 59.70% |
| Indica I | 374 | 90.11% | 9.89% |
| Indica II | 212 | 95.28% | 4.72% |
| Indica Intermediate | 211 | 85.78% | 14.22% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1106623809 | C->T | LOC_Os11g11940(LOC_Os11g11940.1) | INTRON |