Detailed information of SNP:
|
SNP ID:
sf1106625876(Gbrowse)
Chromosome: chr11 Position: 6625876 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1391 | 89.07% | 10.93% |
| All Indica | 798 | 98.75% | 1.25% |
| All Japonica | 474 | 71.52% | 28.48% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 98.13% | 1.87% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 321 | 69.16% | 30.84% |
| Tropical Japonica | 88 | 80.68% | 19.32% |
| Japonica Intermediate | 65 | 70.77% | 29.23% |
| Group VI/Aromatic | 12 | 50.00% | 50.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1106625876 | G->A | INTERGENIC | None |