Detailed information of SNP:
|
SNP ID:
sf1106665940(Gbrowse)
Chromosome: chr11 Position: 6665940 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 73.25% | 26.75% |
| All Indica | 796 | 97.86% | 2.14% |
| All Japonica | 495 | 33.94% | 66.06% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 373 | 97.59% | 2.41% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 29.55% | 70.45% |
| Tropical Japonica | 92 | 42.39% | 57.61% |
| Japonica Intermediate | 68 | 44.12% | 55.88% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1106665940 | C->T | LOC_Os11g12000(LOC_Os11g12000.1) | INTRON |