Detailed information of SNP:
|
SNP ID:
sf1106666434(Gbrowse)
Chromosome: chr11 Position: 6666434 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 93.78% | 6.22% |
| All Indica | 797 | 89.71% | 10.29% |
| All Japonica | 495 | 98.99% | 1.01% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 89.87% | 10.13% |
| Indica II | 211 | 93.84% | 6.16% |
| Indica Intermediate | 211 | 85.31% | 14.69% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 92 | 96.74% | 3.26% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1106666434 | G->A | LOC_Os11g12000(LOC_Os11g12000.1) | INTRON |