Detailed information of SNP:
|
SNP ID:
sf1106673003(Gbrowse)
Chromosome: chr11 Position: 6673003 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1356 | 81.49% | 18.51% |
| All Indica | 740 | 70.14% | 29.86% |
| All Japonica | 494 | 97.77% | 2.23% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 343 | 76.38% | 23.62% |
| Indica II | 203 | 62.56% | 37.44% |
| Indica Intermediate | 194 | 67.01% | 32.99% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 91 | 90.11% | 9.89% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1106673003 | T->G | LOC_Os11g12000(LOC_Os11g12000.1) | INTRON |