Detailed information of SNP:
|
SNP ID:
sf1106686397(Gbrowse)
Chromosome: chr11 Position: 6686397 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 88.12% | 11.88% |
| All Indica | 799 | 87.98% | 12.02% |
| All Japonica | 497 | 86.52% | 13.48% |
| Aus | 62 | 93.55% | 6.45% |
| Indica I | 375 | 88.00% | 12.00% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 211 | 83.41% | 16.59% |
| Temperate Japonica | 335 | 81.79% | 18.21% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1106686397 | A->G | LOC_Os11g12020(LOC_Os11g12020.1) | Non-Synonymous SNP |