Detailed information of SNP:
|
SNP ID:
sf1106796426(Gbrowse)
Chromosome: chr11 Position: 6796426 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 97.44% | 2.56% |
| All Indica | 790 | 96.46% | 3.54% |
| All Japonica | 495 | 99.60% | 0.40% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 368 | 95.65% | 4.35% |
| Indica II | 211 | 98.58% | 1.42% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 333 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1106796426 | G->A | LOC_Os11g12200(LOC_Os11g12200.1) | INTRON |