Detailed information of SNP:
|
SNP ID:
sf1106866120(Gbrowse)
Chromosome: chr11 Position: 6866120 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 73.32% | 26.68% |
| All Indica | 799 | 98.87% | 1.13% |
| All Japonica | 495 | 30.10% | 69.90% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 334 | 23.95% | 76.05% |
| Tropical Japonica | 93 | 52.69% | 47.31% |
| Japonica Intermediate | 68 | 29.41% | 70.59% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1106866120 | C->A | INTERGENIC | None |