Detailed information of SNP:
|
SNP ID:
sf1106881221(Gbrowse)
Chromosome: chr11 Position: 6881221 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 67.30% | 32.70% |
| All Indica | 799 | 89.24% | 10.76% |
| All Japonica | 497 | 29.58% | 70.42% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 89.60% | 10.40% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 83.41% | 16.59% |
| Temperate Japonica | 335 | 24.48% | 75.52% |
| Tropical Japonica | 94 | 50.00% | 50.00% |
| Japonica Intermediate | 68 | 26.47% | 73.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1106881221 | A->G | INTERGENIC | None |