Detailed information of SNP:
|
SNP ID:
sf1106984469(Gbrowse)
Chromosome: chr11 Position: 6984469 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 98.01% | 1.99% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 486 | 94.86% | 5.14% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 85 | 88.24% | 11.76% |
| Japonica Intermediate | 66 | 92.42% | 7.58% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1106984469 | G->A | LOC_Os11g12500(LOC_Os11g12500.1) | INTRON |