Detailed information of SNP:
|
SNP ID:
sf1107079943(Gbrowse)
Chromosome: chr11 Position: 7079943 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 90.64% | 9.36% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 488 | 77.05% | 22.95% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 75.52% | 24.48% |
| Tropical Japonica | 86 | 75.58% | 24.42% |
| Japonica Intermediate | 67 | 86.57% | 13.43% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1107079943 | A->G | INTERGENIC | None |