Detailed information of SNP:



SNP ID: sf1107080729(Gbrowse)

Chromosome: chr11

Position: 7080729
Major allele: T

Minor allele: G

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of G(minor allele)
All1419 94.43% 5.57%
All Indica799 99.75% 0.25%
All Japonica497 85.92% 14.08%
Aus67 95.52% 4.48%
Indica I375 99.47% 0.53%
Indica II213 100.00% 0.00%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica335 80.30% 19.70%
Tropical Japonica94 98.94% 1.06%
Japonica Intermediate68 95.59% 4.41%
Group VI/Aromatic14 85.71% 14.29%
Intermediate42 95.24% 4.76%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1107080729 T->G INTERGENIC None