Detailed information of SNP:
|
SNP ID:
sf1107084400(Gbrowse)
Chromosome: chr11 Position: 7084400 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 92.27% | 7.73% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 488 | 80.74% | 19.26% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 330 | 76.97% | 23.03% |
| Tropical Japonica | 90 | 91.11% | 8.89% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1107084400 | G->A | INTERGENIC | None |