Detailed information of SNP:
|
SNP ID:
sf1107089030(Gbrowse)
Chromosome: chr11 Position: 7089030 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1351 | 97.48% | 2.52% |
| All Indica | 797 | 99.75% | 0.25% |
| All Japonica | 440 | 93.64% | 6.36% |
| Aus | 62 | 98.39% | 1.61% |
| Indica I | 373 | 99.46% | 0.54% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 282 | 90.43% | 9.57% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 64 | 98.44% | 1.56% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 39 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1107089030 | T->A | INTERGENIC | None |