Detailed information of SNP:
|
SNP ID:
sf1107104392(Gbrowse)
Chromosome: chr11 Position: 7104392 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1396 | 92.41% | 7.59% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 475 | 78.74% | 21.26% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 323 | 77.09% | 22.91% |
| Tropical Japonica | 85 | 76.47% | 23.53% |
| Japonica Intermediate | 67 | 89.55% | 10.45% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1107104392 | C->T | LOC_Os11g12620(LOC_Os11g12620.1) | INTRON |