Detailed information of SNP:
|
SNP ID:
sf1107125605(Gbrowse)
Chromosome: chr11 Position: 7125605 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 88.89% | 11.11% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 483 | 71.01% | 28.99% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 323 | 74.92% | 25.08% |
| Tropical Japonica | 94 | 70.21% | 29.79% |
| Japonica Intermediate | 66 | 53.03% | 46.97% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1107125605 | G->T | INTERGENIC | None |