Detailed information of SNP:
|
SNP ID:
sf1107143567(Gbrowse)
Chromosome: chr11 Position: 7143567 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 97.52% | 2.48% |
| All Indica | 795 | 97.86% | 2.14% |
| All Japonica | 496 | 97.78% | 2.22% |
| Aus | 65 | 93.85% | 6.15% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 211 | 93.36% | 6.64% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1107143567 | C->T | INTERGENIC | None |