Detailed information of SNP:
|
SNP ID:
sf1107181924(Gbrowse)
Chromosome: chr11 Position: 7181924 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1149 | 79.37% | 20.63% |
| All Indica | 671 | 68.70% | 31.30% |
| All Japonica | 368 | 95.38% | 4.62% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 321 | 82.87% | 17.13% |
| Indica II | 181 | 34.81% | 65.19% |
| Indica Intermediate | 169 | 78.11% | 21.89% |
| Temperate Japonica | 270 | 97.04% | 2.96% |
| Tropical Japonica | 49 | 89.80% | 10.20% |
| Japonica Intermediate | 49 | 91.84% | 8.16% |
| Group VI/Aromatic | 10 | 100.00% | 0.00% |
| Intermediate | 34 | 73.53% | 26.47% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1107181924 | T->C | LOC_Os11g12730(LOC_Os11g12730.1) | Synonymous |