Detailed information of SNP:
|
SNP ID:
sf1107271728(Gbrowse)
Chromosome: chr11 Position: 7271728 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 67.40% | 32.60% |
| All Indica | 786 | 44.40% | 55.60% |
| All Japonica | 497 | 97.99% | 2.01% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 369 | 38.21% | 61.79% |
| Indica II | 209 | 58.85% | 41.15% |
| Indica Intermediate | 208 | 40.87% | 59.13% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1107271728 | G->A | INTERGENIC | None |