Detailed information of SNP:
|
SNP ID:
sf1107271923(Gbrowse)
Chromosome: chr11 Position: 7271923 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 64.01% | 35.99% |
| All Indica | 785 | 90.32% | 9.68% |
| All Japonica | 496 | 20.77% | 79.23% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 367 | 91.55% | 8.45% |
| Indica II | 212 | 90.57% | 9.43% |
| Indica Intermediate | 206 | 87.86% | 12.14% |
| Temperate Japonica | 335 | 23.88% | 76.12% |
| Tropical Japonica | 93 | 13.98% | 86.02% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1107271923 | C->T | INTERGENIC | None |