Detailed information of SNP:
|
SNP ID:
sf1107314149(Gbrowse)
Chromosome: chr11 Position: 7314149 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1386 | 76.62% | 23.38% |
| All Indica | 769 | 91.81% | 8.19% |
| All Japonica | 495 | 56.36% | 43.64% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 367 | 95.10% | 4.90% |
| Indica II | 199 | 85.43% | 14.57% |
| Indica Intermediate | 203 | 92.12% | 7.88% |
| Temperate Japonica | 335 | 57.91% | 42.09% |
| Tropical Japonica | 92 | 41.30% | 58.70% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1107314149 | G->A | INTERGENIC | None |