Detailed information of SNP:
|
SNP ID:
sf1107326659(Gbrowse)
Chromosome: chr11 Position: 7326659 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 55.82% | 44.18% |
| All Indica | 798 | 93.23% | 6.77% |
| All Japonica | 497 | 5.43% | 94.57% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 375 | 93.87% | 6.13% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 210 | 88.10% | 11.90% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 14.89% | 85.11% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1107326659 | C->T | INTERGENIC | None |