Detailed information of SNP:
|
SNP ID:
sf1107338155(Gbrowse)
Chromosome: chr11 Position: 7338155 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1407 | 80.60% | 19.40% |
| All Indica | 792 | 88.89% | 11.11% |
| All Japonica | 493 | 69.37% | 30.63% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 372 | 91.13% | 8.87% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 207 | 80.68% | 19.32% |
| Temperate Japonica | 333 | 65.77% | 34.23% |
| Tropical Japonica | 92 | 66.30% | 33.70% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1107338155 | T->C | LOC_Os11g13410(LOC_Os11g13410.1) | Synonymous |