Detailed information of SNP:
|
SNP ID:
sf1107359828(Gbrowse)
Chromosome: chr11 Position: 7359828 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1400 | 62.29% | 37.71% |
| All Indica | 780 | 39.23% | 60.77% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 67 | 52.24% | 47.76% |
| Indica I | 363 | 46.28% | 53.72% |
| Indica II | 209 | 26.32% | 73.68% |
| Indica Intermediate | 208 | 39.90% | 60.10% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1107359828 | T->C | INTERGENIC | None |