Detailed information of SNP:
|
SNP ID:
sf1107365813(Gbrowse)
Chromosome: chr11 Position: 7365813 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 68.91% | 31.09% |
| All Indica | 793 | 47.29% | 52.71% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 372 | 54.30% | 45.70% |
| Indica II | 213 | 29.11% | 70.89% |
| Indica Intermediate | 208 | 53.37% | 46.63% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1107365813 | A->G | INTERGENIC | None |