Detailed information of SNP:
|
SNP ID:
sf1107370998(Gbrowse)
Chromosome: chr11 Position: 7370998 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1326 | 58.97% | 41.03% |
| All Indica | 717 | 72.25% | 27.75% |
| All Japonica | 493 | 39.96% | 60.04% |
| Aus | 62 | 75.81% | 24.19% |
| Indica I | 327 | 66.97% | 33.03% |
| Indica II | 201 | 87.06% | 12.94% |
| Indica Intermediate | 189 | 65.61% | 34.39% |
| Temperate Japonica | 333 | 40.24% | 59.76% |
| Tropical Japonica | 93 | 47.31% | 52.69% |
| Japonica Intermediate | 67 | 28.36% | 71.64% |
| Group VI/Aromatic | 13 | 7.69% | 92.31% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1107370998 | G->C | LOC_Os11g13459(LOC_Os11g13459.1) | INTRON |