Detailed information of SNP:
SNP ID:
sf1107372446(Gbrowse)
Chromosome: chr11 Position: 7372446 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
---|---|---|---|
All | 1415 | 77.10% | 22.90% |
All Indica | 796 | 60.68% | 39.32% |
All Japonica | 497 | 99.60% | 0.40% |
Aus | 67 | 97.01% | 2.99% |
Indica I | 373 | 69.71% | 30.29% |
Indica II | 213 | 38.03% | 61.97% |
Indica Intermediate | 210 | 67.62% | 32.38% |
Temperate Japonica | 335 | 99.40% | 0.60% |
Tropical Japonica | 94 | 100.00% | 0.00% |
Japonica Intermediate | 68 | 100.00% | 0.00% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1107372446 | T->C | LOC_Os11g13459(LOC_Os11g13459.1) | Non-Synonymous SNP |