Detailed information of SNP:
|
SNP ID:
sf1107379431(Gbrowse)
Chromosome: chr11 Position: 7379431 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1400 | 60.43% | 39.57% |
| All Indica | 783 | 73.69% | 26.31% |
| All Japonica | 496 | 39.52% | 60.48% |
| Aus | 65 | 80.00% | 20.00% |
| Indica I | 369 | 68.02% | 31.98% |
| Indica II | 209 | 90.43% | 9.57% |
| Indica Intermediate | 205 | 66.83% | 33.17% |
| Temperate Japonica | 335 | 40.00% | 60.00% |
| Tropical Japonica | 93 | 47.31% | 52.69% |
| Japonica Intermediate | 68 | 26.47% | 73.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1107379431 | T->G | LOC_Os11g13480(LOC_Os11g13480.1) | INTRON |