Detailed information of SNP:
|
SNP ID:
sf1107380464(Gbrowse)
Chromosome: chr11 Position: 7380464 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 72.54% | 27.46% |
| All Indica | 795 | 53.33% | 46.67% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 65 | 92.31% | 7.69% |
| Indica I | 372 | 61.02% | 38.98% |
| Indica II | 212 | 33.49% | 66.51% |
| Indica Intermediate | 211 | 59.72% | 40.28% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1107380464 | C->T | INTERGENIC | None |