Detailed information of SNP:
|
SNP ID:
sf1107388309(Gbrowse)
Chromosome: chr11 Position: 7388309 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1407 | 98.65% | 1.35% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 485 | 96.29% | 3.71% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 329 | 99.70% | 0.30% |
| Tropical Japonica | 88 | 80.68% | 19.32% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1107388309 | A->G | LOC_Os11g13490(LOC_Os11g13490.1) | INTRON |