Detailed information of SNP:
|
SNP ID:
sf1107409849(Gbrowse)
Chromosome: chr11 Position: 7409849 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1400 | 53.57% | 46.43% |
| All Indica | 784 | 88.65% | 11.35% |
| All Japonica | 496 | 6.45% | 93.55% |
| Aus | 64 | 10.94% | 89.06% |
| Indica I | 369 | 88.89% | 11.11% |
| Indica II | 211 | 91.94% | 8.06% |
| Indica Intermediate | 204 | 84.80% | 15.20% |
| Temperate Japonica | 335 | 3.88% | 96.12% |
| Tropical Japonica | 93 | 10.75% | 89.25% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 35.71% | 64.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1107409849 | A->G | INTERGENIC | None |