Detailed information of SNP:
|
SNP ID:
sf1107470712(Gbrowse)
Chromosome: chr11 Position: 7470712 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 59.76% | 40.24% |
| All Indica | 795 | 57.74% | 42.26% |
| All Japonica | 496 | 58.27% | 41.73% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 373 | 52.28% | 47.72% |
| Indica II | 212 | 66.98% | 33.02% |
| Indica Intermediate | 210 | 58.10% | 41.90% |
| Temperate Japonica | 334 | 60.78% | 39.22% |
| Tropical Japonica | 94 | 54.26% | 45.74% |
| Japonica Intermediate | 68 | 51.47% | 48.53% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1107470712 | T->C | INTERGENIC | None |