Detailed information of SNP:
|
SNP ID:
sf1107477492(Gbrowse)
Chromosome: chr11 Position: 7477492 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1371 | 87.60% | 12.40% |
| All Indica | 753 | 99.87% | 0.13% |
| All Japonica | 496 | 70.16% | 29.84% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 358 | 99.72% | 0.28% |
| Indica II | 199 | 100.00% | 0.00% |
| Indica Intermediate | 196 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 72.24% | 27.76% |
| Tropical Japonica | 93 | 69.89% | 30.11% |
| Japonica Intermediate | 68 | 60.29% | 39.71% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1107477492 | A->G | INTERGENIC | None |