Detailed information of SNP:
|
SNP ID:
sf1107484600(Gbrowse)
Chromosome: chr11 Position: 7484600 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 87.85% | 12.15% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 494 | 69.23% | 30.77% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 69.76% | 30.24% |
| Tropical Japonica | 92 | 73.91% | 26.09% |
| Japonica Intermediate | 68 | 60.29% | 39.71% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1107484600 | A->G | INTERGENIC | None |