Detailed information of SNP:
|
SNP ID:
sf1107495749(Gbrowse)
Chromosome: chr11 Position: 7495749 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1191 | 97.06% | 2.94% |
| All Indica | 788 | 99.87% | 0.13% |
| All Japonica | 331 | 91.84% | 8.16% |
| Aus | 23 | 78.26% | 21.74% |
| Indica I | 372 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 203 | 100.00% | 0.00% |
| Temperate Japonica | 227 | 89.87% | 10.13% |
| Tropical Japonica | 55 | 98.18% | 1.82% |
| Japonica Intermediate | 49 | 93.88% | 6.12% |
| Group VI/Aromatic | 12 | 91.67% | 8.33% |
| Intermediate | 37 | 97.30% | 2.70% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1107495749 | C->G | INTERGENIC | None |