Detailed information of SNP:
SNP ID:
sf1107495749(Gbrowse)
Chromosome: chr11 Position: 7495749 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
---|---|---|---|
All | 1191 | 97.06% | 2.94% |
All Indica | 788 | 99.87% | 0.13% |
All Japonica | 331 | 91.84% | 8.16% |
Aus | 23 | 78.26% | 21.74% |
Indica I | 372 | 99.73% | 0.27% |
Indica II | 213 | 100.00% | 0.00% |
Indica Intermediate | 203 | 100.00% | 0.00% |
Temperate Japonica | 227 | 89.87% | 10.13% |
Tropical Japonica | 55 | 98.18% | 1.82% |
Japonica Intermediate | 49 | 93.88% | 6.12% |
Group VI/Aromatic | 12 | 91.67% | 8.33% |
Intermediate | 37 | 97.30% | 2.70% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1107495749 | C->G | INTERGENIC | None |