Detailed information of SNP:
|
SNP ID:
sf1107496453(Gbrowse)
Chromosome: chr11 Position: 7496453 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 75.56% | 24.44% |
| All Indica | 798 | 97.99% | 2.01% |
| All Japonica | 497 | 49.30% | 50.70% |
| Aus | 66 | 9.09% | 90.91% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 95.71% | 4.29% |
| Temperate Japonica | 335 | 52.24% | 47.76% |
| Tropical Japonica | 94 | 32.98% | 67.02% |
| Japonica Intermediate | 68 | 57.35% | 42.65% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1107496453 | G->A | INTERGENIC | None |