Detailed information of SNP:
|
SNP ID:
sf1107580533(Gbrowse)
Chromosome: chr11 Position: 7580533 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 96.54% | 3.46% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 496 | 91.33% | 8.67% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 57.45% | 42.55% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1107580533 | A->G | LOC_Os11g13800(LOC_Os11g13800.2) | UTR_3_PRIME |
| sf1107580533 | A->G | LOC_Os11g13800(LOC_Os11g13800.1) | UTR_3_PRIME |
| sf1107580533 | A->G | LOC_Os11g13800(LOC_Os11g13800.3) | UTR_3_PRIME |