Detailed information of SNP:
|
SNP ID:
sf1107584656(Gbrowse)
Chromosome: chr11 Position: 7584656 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1403 | 56.17% | 43.83% |
| All Indica | 784 | 93.11% | 6.89% |
| All Japonica | 497 | 6.24% | 93.76% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 370 | 93.78% | 6.22% |
| Indica II | 208 | 96.63% | 3.37% |
| Indica Intermediate | 206 | 88.35% | 11.65% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 17.02% | 82.98% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1107584656 | G->A | INTERGENIC | None |