Detailed information of SNP:
|
SNP ID:
sf1107613373(Gbrowse)
Chromosome: chr11 Position: 7613373 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 63.60% | 36.40% |
| All Indica | 793 | 40.23% | 59.77% |
| All Japonica | 496 | 94.56% | 5.44% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 373 | 28.42% | 71.58% |
| Indica II | 211 | 54.50% | 45.50% |
| Indica Intermediate | 209 | 46.89% | 53.11% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 93 | 84.95% | 15.05% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1107613373 | G->A | LOC_Os11g13820(LOC_Os11g13820.1) | INTRON |