Detailed information of SNP:
|
SNP ID:
sf1107616889(Gbrowse)
Chromosome: chr11 Position: 7616889 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 82.51% | 17.49% |
| All Indica | 799 | 74.72% | 25.28% |
| All Japonica | 496 | 92.54% | 7.46% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 91.47% | 8.53% |
| Indica II | 213 | 48.36% | 51.64% |
| Indica Intermediate | 211 | 71.56% | 28.44% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 62.77% | 37.23% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1107616889 | C->T | INTERGENIC | None |