Detailed information of SNP:
|
SNP ID:
sf1107665117(Gbrowse)
Chromosome: chr11 Position: 7665117 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 59.22% | 40.78% |
| All Indica | 799 | 96.75% | 3.25% |
| All Japonica | 495 | 6.46% | 93.54% |
| Aus | 67 | 17.91% | 82.09% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 333 | 2.40% | 97.60% |
| Tropical Japonica | 94 | 15.96% | 84.04% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1107665117 | A->T | INTERGENIC | None |