Detailed information of SNP:
|
SNP ID:
sf1107671029(Gbrowse)
Chromosome: chr11 Position: 7671029 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 57.05% | 42.95% |
| All Indica | 799 | 93.12% | 6.88% |
| All Japonica | 496 | 6.25% | 93.75% |
| Aus | 67 | 17.91% | 82.09% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 86.73% | 13.27% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 93 | 16.13% | 83.87% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1107671029 | C->T | INTERGENIC | None |