Detailed information of SNP:
|
SNP ID:
sf1107740547(Gbrowse)
Chromosome: chr11 Position: 7740547 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 58.59% | 41.41% |
| All Indica | 799 | 95.87% | 4.13% |
| All Japonica | 495 | 6.67% | 93.33% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 334 | 2.40% | 97.60% |
| Tropical Japonica | 93 | 18.28% | 81.72% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1107740547 | G->C | INTERGENIC | None |