Detailed information of SNP:
|
SNP ID:
sf1107741059(Gbrowse)
Chromosome: chr11 Position: 7741059 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1396 | 97.21% | 2.79% |
| All Indica | 796 | 99.62% | 0.38% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 52 | 40.38% | 59.62% |
| Indica I | 372 | 99.19% | 0.81% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 12 | 91.67% | 8.33% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1107741059 | C->T | INTERGENIC | None |