Detailed information of SNP:
|
SNP ID:
sf1107745074(Gbrowse)
Chromosome: chr11 Position: 7745074 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 53.98% | 46.02% |
| All Indica | 799 | 89.86% | 10.14% |
| All Japonica | 497 | 6.24% | 93.76% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 375 | 85.87% | 14.13% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 18.09% | 81.91% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 33.33% | 66.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1107745074 | G->A | INTERGENIC | None |