Detailed information of SNP:
|
SNP ID:
sf1107761175(Gbrowse)
Chromosome: chr11 Position: 7761175 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 53.60% | 46.40% |
| All Indica | 799 | 89.24% | 10.76% |
| All Japonica | 497 | 5.84% | 94.16% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 375 | 85.60% | 14.40% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 88.63% | 11.37% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 15.96% | 84.04% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 36.59% | 63.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1107761175 | A->G | INTERGENIC | None |