Detailed information of SNP:
|
SNP ID:
sf1107877169(Gbrowse)
Chromosome: chr11 Position: 7877169 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 83.52% | 16.48% |
| All Indica | 799 | 98.12% | 1.88% |
| All Japonica | 489 | 64.62% | 35.38% |
| Aus | 64 | 57.81% | 42.19% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 332 | 78.31% | 21.69% |
| Tropical Japonica | 89 | 32.58% | 67.42% |
| Japonica Intermediate | 68 | 39.71% | 60.29% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1107877169 | G->A | INTERGENIC | None |