Detailed information of SNP:
|
SNP ID:
sf1107879278(Gbrowse)
Chromosome: chr11 Position: 7879278 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 63.00% | 37.00% |
| All Indica | 799 | 36.55% | 63.45% |
| All Japonica | 497 | 97.99% | 2.01% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 30.67% | 69.33% |
| Indica II | 213 | 38.97% | 61.03% |
| Indica Intermediate | 211 | 44.55% | 55.45% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1107879278 | G->T | INTERGENIC | None |