Detailed information of SNP:
|
SNP ID:
sf1107888984(Gbrowse)
Chromosome: chr11 Position: 7888984 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 61.54% | 38.46% |
| All Indica | 797 | 34.38% | 65.62% |
| All Japonica | 497 | 97.38% | 2.62% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 29.87% | 70.13% |
| Indica II | 212 | 38.21% | 61.79% |
| Indica Intermediate | 210 | 38.57% | 61.43% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1107888984 | G->A | INTERGENIC | None |