Detailed information of SNP:
|
SNP ID:
sf1107892008(Gbrowse)
Chromosome: chr11 Position: 7892008 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 87.92% | 12.08% |
| All Indica | 795 | 82.01% | 17.99% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 375 | 91.20% | 8.80% |
| Indica II | 212 | 65.09% | 34.91% |
| Indica Intermediate | 208 | 82.69% | 17.31% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1107892008 | G->A | INTERGENIC | None |